| Par. | Pts | Goles | Dif | P.G. | P.E. | P.P. | ||
|---|---|---|---|---|---|---|---|---|
| 1. | 1. FC Köln | 34 | 63 | 84:47 | 37 | 19 | 6 | 9 |
| 2. | SC Paderborn 07 | 34 | 57 | 76:50 | 26 | 16 | 9 | 9 |
| 3. | 1. FC Union Berlin | 34 | 57 | 54:33 | 21 | 14 | 15 | 5 |
| 4. | Hamburger SV | 34 | 56 | 45:42 | 3 | 16 | 8 | 10 |
| 5. | 1. FC Heidenheim 1846 | 34 | 55 | 55:45 | 10 | 15 | 10 | 9 |
| 6. | Holstein Kiel | 34 | 49 | 60:51 | 9 | 13 | 10 | 11 |
| 7. | Arminia Bielefeld | 34 | 49 | 52:50 | 2 | 13 | 10 | 11 |
| 8. | Jahn Regensburg | 34 | 49 | 55:54 | 1 | 12 | 13 | 9 |
| 9. | FC St. Pauli | 34 | 49 | 46:53 | -7 | 14 | 7 | 13 |
| 10. | SV Darmstadt 98 | 34 | 46 | 45:53 | -8 | 13 | 7 | 14 |
| 11. | VfL Bochum | 34 | 44 | 49:50 | -1 | 11 | 11 | 12 |
| 12. | Dinamo de Dresden | 34 | 42 | 41:48 | -7 | 11 | 9 | 14 |
| 13. | SpVgg Greuther Fürth | 34 | 42 | 37:56 | -19 | 10 | 12 | 12 |
| 14. | Erzgebirge Aue | 34 | 40 | 43:47 | -4 | 11 | 7 | 16 |
| 15. | SV Sandhausen | 34 | 38 | 45:52 | -7 | 9 | 11 | 14 |
| 16. | FC Ingolstadt | 34 | 35 | 43:55 | -12 | 9 | 8 | 17 |
| 17. | 1. FC Magdeburg | 34 | 31 | 35:53 | -18 | 6 | 13 | 15 |
| 18. | MSV Duisburg | 34 | 28 | 39:65 | -26 | 6 | 10 | 18 |